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\documentclass[12pt]{uthesis-v12} % [invariant]

% packages
\usepackage{hyperref}
\usepackage{epigraph}
\usepackage{listings}
\usepackage[dvips]{graphicx}
\graphicspath{{images/}}
\DeclareGraphicsExtensions{.eps}

\begin{document}
\title{combox}
\author{Siddharth Ravikumar}
\copyrightpage{yes}

\mydocument{Project}
\degree{Masters of Science}{Computer Science}
\conferraldate{May}{2016}

\advisor{Dr.~Robert C. Green II}
\graduatedean{Dr.~Michael Ogawa}{Dean}

\maketitle

% abstract
\include{prologue/abstract}
% dedication
\include{prologue/dedication}
% acknowledgments
\include{prologue/ack}

\tableofcontents
\listoftables \listoffigures
\captionformat{hang}

% abbreviations
\include{prologue/abbrev}
% preface
\include{prologue/preface}

\makebody % [invariant]

% chapters
%% 1
\include{chapters/1-intr}
%% 2
\include{chapters/2-lit-r}
%% 3
\include{chapters/3-arch-d}
%% 4
\include{chapters/4-testing}
%% 5
\include{chapters/5-con-f}

%% references
\bibliographystyle{IEEEtran}
\bibliography{bib/combox}

%% appendix
\appendix
\include{appendix/combox-2to3}
\end{document}